The missing missions were Chahbek Village and Venta Cemetery.
I suspected Chahbek was too "early" to be in the NF book, which is why I let it go when it didn't appear (of course, now I checked, it is inscribed in my Young Heroes of Tyria book!).
But when it happened with Venta Cemetery, I questioned it. I was definitely in hm. Oh well, I'll try it again and see.
Thanks for the help!